Installation and Features

R Package: Download from CRAN | View on CytokineProfile Website

Shiny App: Launch the CytokineProfile Shiny App | See installation/usage instructions

CytoProfile R Package

Exploratory Analysis: Quickly generate enriched bar plots, boxplots, and summary statistics to assess your data.
Statistical Testing: Perform t-tests, ANOVA, and other univariate methods with ease.
Multivariate Analysis: Utilize PCA, PLS-DA, and other techniques for deeper insights.
Machine Learning: Integrate Random Forest and XGBoost models for predictive analysis.
Data Handling: Seamlessly load and preprocess cytokine data for efficient analysis.

See more at CytoProfile’s website for installation instructions.

Install CytoProfile from CRAN with:

install.packages("CytoProfile")

Data Upload & Built-in Data Options: Upload your own data files (CSV, TXT, Excel) or choose from built-in datasets.
Dynamic Column Selection & Filtering: Easily select columns and apply filters based on categorical variables to focus your analysis.
Multiple Analysis Functions:
- Choose from several analysis functions, including:
  1. ANOVA
  2. Boxplots and Enhanced Boxplots
  3. Error-Bar Plots
  4. Dual-Flashlight Plot
  5. Heatmap
  6. Principal Component Analysis (PCA)
  7. Random Forest
  8. Skewness/Kurtosis
  9. Sparse Partial Least Squares - Discriminant Analysis (sPLS-DA)
  10. Two-Sample T-Test
  11. Volcano Plot
  12. Extreme Gradient Boosting (XGBoost)
Interactive & Downloadable Outputs: View results directly within the app or download outputs (e.g., PDF reports, images).
Step-by-Step Wizard Navigation: A guided process takes you through data upload, column selection, configuration of analysis options, and result display.
Theme Toggle: Switch between Light and Dark themes to suit your visual preference.
Inline Help & Tooltips: Detailed helper text accompanies each input field to assist with configuration and interpretation.

See more at CytokineProfile Shiny for installation instructions.

The app is available to access at CytokineProfile Shiny App.